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Kidder, G. M. and Conlon, R. A. (1985) Utilization of cytoplasmic poly(A)+ RNA for protein synthesis in preimplantation mouse embryos. J. Embryol. exp. Morph. 89, 223-234.

Conlon, R. A., Tufaro, F. and Brandhorst, B. P. (1987) Post-transcriptional restriction of gene expression in sea urchin interspecies hybrid embryos. Genes Dev. 1, 337-346.

Moens, C. B., Auerbach, A. B., Conlon, R. A., Joyner, A. L. and Rossant, J. (1992) A targeted mutation reveals a role for N-myc in branching morphogenesis in the embryonic mouse lung. Genes Dev. 6: 691-704.

Dumont, D. J., Yamaguchi, T. P., Conlon, R. A., Rossant, J. and Breitman, M. L. (1992) tek, a novel tyrosine kinase gene located on mouse chromosome 4, is expressed in endothelial cells and their presumptive precursors. Oncogene 7: 1471-1480.

Yamaguchi, T. P., Conlon, R. A. and Rossant, J. (1992) Expression of the fibroblast growth factor receptor FGFR-1/flg during gastrulation and segmentation in the mouse embryo. Dev. Biol. 152: 75-88.

Conlon, R. A. and Rossant, J. (1992) Exogenous retinoic acid rapidly induces anterior ectopic expression of murine Hox-2 genes in vivo. Development 116: 357-368.

Reaume, A.G., Conlon, R. A., Zirngibl, R., Yamaguchi, T. P. and Rossant, J. (1992) Expression analysis of a Notch homologue in the mouse embryo. Dev. Biol. 154: 377-387.

Yamaguchi, T. P., Dumont, D. J., Conlon, R. A., Breitman, M. and Rossant, J. (1993) flk-1, a flt-related receptor tyrosine kinase is an early marker for endothelial cell precursors. Development 118: 489-498.

Conlon, R. A. and Herrmann, B.G. (1993) Detection of messenger RNA by in situ hybridization to postimplantation embryo whole mounts. Methods in Enzymology 225: 373-383.

Henkemeyer, M., Marengere, L. E. M., McGlade, J., Olivier, J. P., Conlon, R. A., Holmyard, D. P., Letwin, K. and Pawson, T. (1994) Nuk: a receptor-like tyrosine kinase is localized to specific compartments of the neural tube and to early axons in the developing murine nervous system. Oncogene 9: 1001-1014.

Ang, S. L., Conlon, R. A., Jin, O. and Rossant, J. (1994) Positive and negative signals from mesoderm regulate the expression of mouse otx2 in ectoderm explants. Development 120, 2979-2989.

Conlon, R. A., Reaume, A. and Rossant, J. (1995) Notch1 is required for the coordinate segmentation of somites. Development 121. 1533-1545.

Conlon, R. A. (1995) Retinoic acid and pattern formation in vertebrates. Trends Genet. 11, 314-319.

Luo, J., Pasceri, P., Conlon, R. A., Rossant, J. and Giguère, V. (1995) Mice lacking all isoforms of retinoic acid receptor ß develop normally and are susceptible to the teratogenic effects of retinoic acid. Mech. Dev. 53, 61-71.

Conlon, R. A. (1996) Whole mount in situ hybridization to mouse embryos. In A Laboratory Guide to RNA: Isolation, Analysis, and Synthesis (P. Krieg, ed.) John Wiley and Sons, 371-380.

de la Pompa, J. L., Wakeham, A., Correia, K. M., Samper, E., Brown, S., Aguilera, R. J., Nakano, T., Honjo, T., Mak, T. W., Rossant, J. and Conlon, R. A. (1997) Conservation of the Notch signalling pathway in mammalian neurogenesis. Development 124, 1139-1148.

Conlon, R. A. (1997) Whole mount in situ hybridization to embryos and embryonic tissues. In: Recombinant Protein Protocols: Detection And Isolation. (Methods in Molecular Biology; vol. 63; edited by Rocky S. Tuan). Humana Press, 257-262.

Conlon, R. A. (1997) Methods for double detection of gene expression: combined in situ hybridization and immunocytochemistry or histochemistry. In: Recombinant Protein Protocols: Detection And Isolation. (Methods in Molecular Biology; vol. 63; edited by Rocky S. Tuan). Humana Press, 271-274.

Hoang, B. H., Thomas, J. T., Abdul-Karim, F. W., Correia, K. M., Conlon, R. A., Luyten, F. P. and Ballock, R. T. (1998). Expression pattern of two Frizzled-related genes, Frzb-1 and Sfrp-1, during mouse embryogenesis suggests a role for modulating action of Wnt family members. Developmental Dynamics 212: 364-372.

Gerber, W. V., Tatskievych, T. A., Antin, P. B., Correia, K. M., Conlon, R. A. and Krieg, P. A. (1999). The RNA binding protein gene, hermes, is expressed at high levels in the developing heart. Mech. Dev. 80: 77-86.

del Barco Barrantes, I., Elia, E. J., Wünsch, J., Hrabe De Angelis, M., Mak, T. W., Rossant, J., Conlon, R. A., Gossler, A., de la Pompa, J. L. (1999). Interaction between Notch signalling and Lunatic fringe during somite boundary formation in the mouse. Current Biology 9: 470-480.

Conlon, R. A. (2000) Methods for double detection of gene expression: combined in situ hybridization and immunohistochemistry or histochemistry. In: Developmental Biology Protocols. Vol. 3 (edited by Rocky S. Tuan and Cecilia W. Lo) Humana Press.

Conlon R. A. (2000) Methods for double detection of gene expression. Combined in situ hybridization and immunocytochemistry of histochemistry. Methods Mol Biol 137: 149-52.

Correia, K. M. and Conlon, R. A. (2000). Surface ectoderm is necessary for the morphogenesis of somites. Mech. Dev. 91: 19-30

LePage, D. F., Church, D. M., Millie, E., Hassold, T. J. and Conlon, R. A. (2000). Rapid generation of nested chromosomal deletions on mouse chromosome 2. Proc. Nat. Acad. Sci. USA 97: 10471-10476.

Tucker, K. E., Berciano, M. T., Jacobs, E. Y., LePage, D. F., Massello, L. K., Shpargel, K. B., Rossire, J. J., Barber, T. J., Chan, E. K. L., Lafarga, M., Conlon, R. A., Matera, A. G. (2001). Residual Cajal bodies in coilin knockout mice fail to recruit Sm snRNPs and SMN, the Spinal Muscular Atrophy gene product. J. Cell Biol. 154: 293-307.

Correia, K. M. and Conlon, R. A. (2001) Whole-mount in situ hybridization to mouse embryos. Methods 23: 335-338.

Dunwoodie, S. L., Clements, M., Sparrow, D. B., Sa, X., Conlon, R. A. and Beddington, R. S. P. (2002) Axial skeletal defects caused by mutation in the spondylocostal dysplasia/pudgy gene Dll3 are associated with disruption of the segmentation clock within the presomitic mesoderm. Development 129, 1795-1806

Hitoshi, S., Alexson, T., Tropepe, V., Donoviel, D., Elia, A. J., Nye, J. S., Conlon, R. A., Mak, T. W., Bernstein, A. and van der Kooy, D. (2002) Notch pathway molecules are essential for the maintenance, but not the generation, of mammalian neural stem cells. Genes & Dev. 2002 16: 846-858

Yin, Z., Haynie, J., Yang, X., Han, B., Kiatchoosakun, S., Restivo, J., Yuan, S., Prabhakar, N.R., Herrup, K., Conlon, R. A., Hoit, B. D., Watanabe, M., Yang, Y.-C. (2002) Essential role of Cited2, a negative regulator of HIF1-α, in heart development and neurulation. Proc. Natl Acad. Sci. USA, 99(16): 10488-10493.

McCallion, A.S., Stames, E., Conlon, R.A. and Chakravarti, A. (2003) Phenotype variation in two-locus mouse models of Hirschsprung disease: tissue-specific interaction between Ret and Ednrb. Proc. Nat. Acad. Sci. USA, 100(4): 1826-1831.

Atit, R., Conlon, R.A. and Niswander, L. (2003) EGF signaling patterns the feather array by promoting the interbud fate. Dev. Cell 4(2): 231-240.

Hadland, B.K., Huppert, S.S., Kanungo, J., Xue, Y., Jiang, R., Gridley, T., Conlon, R. A., Cheng, A.M., Kopan, R., Longmore, G.D. (2004) A requirement for Notch1 distinguishes 2 phases of definitive hematopoiesis during development. Blood 104(10): 3097-3105.

Woda, J. M., Calzonetti, T., Hilditch-Maquire, P., Duyao, M P., Conlon, R. A., MacDonald, M. E. (2005) Inactivation of the Huntington's disease gene (Hdh) impairs anterior streak formation and early patterning of the mouse embryo. BMC Dev Biol. 5: 17

Scott, M. M., Wylie, C. J., Lerch, J. K., Herlitze, S., Jiang, W., Conlon, R. A., Strowbridge, B. W. and Deneris, E. S. (2005) A genetic approach to access serotonin neurons for in vivo and in vitro studies. Proc. Nat. Acad. Sci. USA 102: 16472-16477.

Hakimi, P., Croniger, C. M., Johnson, M., Yang, J., LePage, D. F., Conlon, R. A., Kalhan, S. C., Reshef, L., Tilghman, S. C. and Hanson, R. W. (2005) Phosphoenolpyruvate carboxykinase and the critical role of cataplerosis in the control of hepatic metabolism. Nutr Metab (Lond). 2:33.

Atit, R., Sgaier, S. K., Mohamed, O.A., Taketo, M. M., Dufort, D., Joyner, A. L., Niswander, L. and Conlon, R. A. (2006) ß-catenin activation is necessary and sufficient to specify the dorsal dermal fate in the mouse. Dev. Biol. 296: 164-176.